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BMCBI
2011
15 years 1 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
ICCD
2002
IEEE
128views Hardware» more  ICCD 2002»
16 years 3 months ago
Subword Sorting with Versatile Permutation Instructions
Subword parallelism has succeeded in accelerating many multimedia applications. Subword permutation instructions have been proposed to efficiently rearrange subwords in or among r...
Zhijie Shi, Ruby B. Lee
CCGRID
2009
IEEE
16 years 1 months ago
Resource Allocation Using Virtual Clusters
— We propose a novel approach for sharing cluster resources among competing jobs. The key advantage of our approach over current solutions is that it increases cluster utilizatio...
Mark Stillwell, David Schanzenbach, Fréd&ea...
217
Voted
ICC
2009
IEEE
143views Communications» more  ICC 2009»
16 years 1 months ago
Low Complexity Markov Chain Monte Carlo Detector for Channels with Intersymbol Interference
— In this paper, we propose a novel low complexity soft-in soft-out (SISO) equalizer using the Markov chain Monte Carlo (MCMC) technique. Direct application of MCMC to SISO equal...
Ronghui Peng, Rong-Rong Chen, Behrouz Farhang-Boro...
ICPPW
2009
IEEE
16 years 1 months ago
Fast Autotuning Configurations of Parameters in Distributed Computing Systems Using Ordinal Optimization
Conventional autotuning configuration of parameters in distributed computing systems using evolutionary strategies increases integrated performance notably, though at the expense ...
Fan Zhang, Junwei Cao, Lianchen Liu, Cheng Wu