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BMCBI
2008
211views more  BMCBI 2008»
15 years 6 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
BMCBI
2006
144views more  BMCBI 2006»
15 years 6 months ago
More robust detection of motifs in coexpressed genes by using phylogenetic information
Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...
BMCBI
2006
93views more  BMCBI 2006»
15 years 6 months ago
A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
INFFUS
2008
175views more  INFFUS 2008»
15 years 6 months ago
Adaptive optimization of join trees for multi-join queries over sensor streams
Data processing applications for sensor streams have to deal with multiple continuous data streams with inputs arriving at highly variable and unpredictable rates from various sour...
Joseph S. Gomes, Hyeong-Ah Choi
IJAC
2006
93views more  IJAC 2006»
15 years 6 months ago
On Word Reversing in Braid Groups
It has been conjectured that in a braid group, or more generally in a Garside group, applying any sequence of monotone equivalences and word reversings can increase the length of a...
Patrick Dehornoy, Bert Wiest
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