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» A Theory of Expressiveness in Mechanisms
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BMCBI
2002
214views more  BMCBI 2002»
15 years 6 months ago
Automated modelling of signal transduction networks
Background: Intracellular signal transduction is achieved by networks of proteins and small molecules that transmit information from the cell surface to the nucleus, where they ul...
Martin Steffen, Allegra Petti, John Aach, Patrik D...
NAR
2011
248views Computer Vision» more  NAR 2011»
14 years 9 months ago
NCBI GEO: archive for functional genomics data sets - 10 years on
A decade ago, the Gene Expression Omnibus (GEO) database was established at the National Center for Biotechnology Information (NCBI). The original objective of GEO was to serve as...
Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite...
SIGSOFT
2007
ACM
16 years 7 months ago
Object and reference immutability using java generics
A compiler-checked immutability guarantee provides useful documentation, facilitates reasoning, and enables optimizations. This paper presents Immutability Generic Java (IGJ), a n...
Yoav Zibin, Alex Potanin, Mahmood Ali, Shay Artzi,...
WWW
2005
ACM
16 years 7 months ago
Using OWL for querying an XML/RDF syntax
Some recent initiatives try to take profit from RDF to make XML documents interoperate at the semantic level. Ontologies are used to establish semantic connections among XML langu...
Jaime Delgado, Rubén Tous
POPL
2005
ACM
16 years 7 months ago
Automated soundness proofs for dataflow analyses and transformations via local rules
We present Rhodium, a new language for writing compiler optimizations that can be automatically proved sound. Unlike our previous work on Cobalt, Rhodium expresses optimizations u...
Sorin Lerner, Todd D. Millstein, Erika Rice, Craig...