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» A Temporal Consensus Model
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BMCBI
2007
135views more  BMCBI 2007»
15 years 6 months ago
Automatic extraction of reliable regions from multiple sequence alignments
Background: High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing lev...
Timo Lassmann, Erik L. L. Sonnhammer
BMCBI
2005
104views more  BMCBI 2005»
15 years 6 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...
BMCBI
2004
144views more  BMCBI 2004»
15 years 6 months ago
PASBio: predicate-argument structures for event extraction in molecular biology
Background: The exploitation of information extraction (IE), a technology aiming to provide instances of structured representations from free-form text, has been rapidly growing w...
Tuangthong Wattarujeekrit, Parantu K. Shah, Nigel ...
EVOW
2010
Springer
15 years 5 months ago
Finding Gapped Motifs by a Novel Evolutionary Algorithm
Background: Identifying approximately repeated patterns, or motifs, in DNA sequences from a set of co-regulated genes is an important step towards deciphering the complex gene reg...
Chengwei Lei, Jianhua Ruan
ACMSE
2010
ACM
15 years 4 months ago
Adaptive stable marriage algorithms
Although it takes O(n2 ) worst-case time to solve a stable marriage problem instance with n men and n women, a trivial O(n) algorithm suffices if all men are known to have identic...
John Dabney, Brian C. Dean