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BMCBI
2004
165views more  BMCBI 2004»
15 years 6 months ago
Analysis of oligonucleotide array experiments with repeated measures using mixed models
Background: Two or more factor mixed factorial experiments are becoming increasingly common in microarray data analysis. In this case study, the two factors are presence (Patients...
Hao Li, Constance L. Wood, Thomas V. Getchell, Mar...
BMCBI
2007
138views more  BMCBI 2007»
15 years 7 months ago
A full Bayesian hierarchical mixture model for the variance of gene differential expression
Background: In many laboratory-based high throughput microarray experiments, there are very few replicates of gene expression levels. Thus, estimates of gene variances are inaccur...
Samuel O. M. Manda, Rebecca E. Walls, Mark S. Gilt...
RECOMB
2004
Springer
16 years 7 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
VIS
2007
IEEE
128views Visualization» more  VIS 2007»
16 years 8 months ago
Modeling Perceptual Dominance Among Visual Cues in Multilayered Icon-based Scientific Visualizations
ization method is an abstract function that transforms a scientific dataset into a visual representation to facilitate data exploration. In turn, a visualization display is the vis...
Daniel Acevedo, Jian Chen, David H. Laidlaw
ICDM
2008
IEEE
122views Data Mining» more  ICDM 2008»
16 years 1 months ago
Nonnegative Matrix Factorization for Combinatorial Optimization: Spectral Clustering, Graph Matching, and Clique Finding
Nonnegative matrix factorization (NMF) is a versatile model for data clustering. In this paper, we propose several NMF inspired algorithms to solve different data mining problems....
Chris H. Q. Ding, Tao Li, Michael I. Jordan