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RECOMB
2007
Springer
16 years 7 months ago
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions
Abstract. Given the substantial computational requirements of stochastic simulation, approximation is essential for efficient analysis of any realistic biochemical system. This pap...
Hiroyuki Kuwahara, Chris J. Myers
RECOMB
2002
Springer
16 years 7 months ago
DNA sequence evolution with neighbor-dependent mutation
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
Peter F. Arndt, Christopher B. Burge, Terence Hwa
SIGMOD
2008
ACM
215views Database» more  SIGMOD 2008»
16 years 7 months ago
CSV: visualizing and mining cohesive subgraphs
Extracting dense sub-components from graphs efficiently is an important objective in a wide range of application domains ranging from social network analysis to biological network...
Nan Wang, Srinivasan Parthasarathy, Kian-Lee Tan, ...
PLDI
2010
ACM
16 years 4 months ago
Breadcrumbs: Efficient Context Sensitivity for Dynamic Bug Detection Analyses
Calling context--the set of active methods on the stack--is critical for understanding the dynamic behavior of large programs. Dynamic program analysis tools, however, are almost ...
Michael D. Bond, Graham Z. Baker, Samuel Z. Guyer
CCS
2009
ACM
16 years 1 months ago
Robust signatures for kernel data structures
Kernel-mode rootkits hide objects such as processes and threads using a technique known as Direct Kernel Object Manipulation (DKOM). Many forensic analysis tools attempt to detect...
Brendan Dolan-Gavitt, Abhinav Srivastava, Patrick ...