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» A Rationale-based Analysis Tool
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NAR
2008
87views more  NAR 2008»
15 years 6 months ago
The CGView Server: a comparative genomics tool for circular genomes
The CGView Server generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. Sequences can b...
Jason R. Grant, Paul Stothard
BMCBI
2006
167views more  BMCBI 2006»
15 years 6 months ago
GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributi
Background: The ever-expanding population of gene expression profiles (EPs) from specified cells and tissues under a variety of experimental conditions is an important but difficu...
Jason M. Doherty, Lynn K. Carmichael, Jason C. Mil...
POPL
2008
ACM
16 years 6 months ago
From dirt to shovels: fully automatic tool generation from ad hoc data
An ad hoc data source is any semistructured data source for which useful data analysis and transformation tools are not readily available. Such data must be queried, transformed a...
Kathleen Fisher, David Walker, Kenny Qili Zhu, Pet...
BMCBI
2008
132views more  BMCBI 2008»
15 years 6 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
BMCBI
2006
160views more  BMCBI 2006»
15 years 6 months ago
MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation
Background: The high-density oligonucleotide microarray (GeneChip) is an important tool for molecular biological research aiming at large-scale detection of small nucleotide polym...
Leandro Hermida, Olivier Schaad, Philippe Demougin...