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HPDC
2010
IEEE
15 years 7 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
HPDC
2010
IEEE
15 years 7 months ago
MOON: MapReduce On Opportunistic eNvironments
MapReduce offers a flexible programming model for processing and generating large data sets on dedicated resources, where only a small fraction of such resources are every unavaila...
Heshan Lin, Xiaosong Ma, Jeremy S. Archuleta, Wu-c...
BMCBI
2010
95views more  BMCBI 2010»
15 years 6 months ago
An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
Background: ChIP-Seq, which combines chromatin immunoprecipitation (ChIP) with high-throughput massively parallel sequencing, is increasingly being used for identification of prot...
Congmao Wang, Jie Xu, Dasheng Zhang, Zoe A. Wilson...
GRID
2006
Springer
15 years 6 months ago
Resource Allocation in Streaming Environments
This paper considers resource allocation algorithms for processing streams of events on computational grids. For example, financial trading applications are executed on large comp...
Lu Tian, K. Mani Chandy
CORR
2011
Springer
142views Education» more  CORR 2011»
14 years 10 months ago
Taming Numbers and Durations in the Model Checking Integrated Planning System
The Model Checking Integrated Planning System (MIPS) has shown distinguished performance in the second and third international planning competitions. With its object-oriented fram...
Stefan Edelkamp