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BCB
2010
140views Bioinformatics» more  BCB 2010»
15 years 1 months ago
Guiding belief propagation using domain knowledge for protein-structure determination
A major bottleneck in high-throughput protein crystallography is producing protein-structure models from an electrondensity map. In previous work, we developed Acmi, a probabilist...
Ameet Soni, Craig A. Bingman, Jude W. Shavlik
BMCBI
2005
116views more  BMCBI 2005»
15 years 6 months ago
SuperLigands - a database of ligand structures derived from the Protein Data Bank
Background: Currently, the PDB contains approximately 29,000 protein structures comprising over 70,000 experimentally determined three-dimensional structures of over 5,000 differe...
Elke Michalsky, Mathias Dunkel, Andrean Goede, Rob...
HPCN
2000
Springer
15 years 10 months ago
An Analytical Model for a Class of Architectures under Master-Slave Paradigm
We build an analytical model for an application utilizing master-slave paradigm. In the model, only three architecture parameters are used: latency, bandwidth and flop rate. Instea...
Yasemin Yalçinkaya, Trond Steihaug
BMCBI
2010
97views more  BMCBI 2010»
15 years 6 months ago
Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear a
Background: Protein kinases play crucial roles in cell growth, differentiation, and apoptosis. Abnormal function of protein kinases can lead to many serious diseases, such as canc...
Maris Lapinsh, Jarl E. S. Wikberg
JCM
2007
140views more  JCM 2007»
15 years 6 months ago
A Dynamic Scheduling Algorithm for Divisible Loads in Grid Environments
—Divisible loads are those workloads that can be partitioned by a scheduler into any arbitrary chunks. The problem of scheduling divisible loads has been defined for a long time,...
Nguyen The Loc, Said Elnaffar