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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
16 years 1 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
PPOPP
2006
ACM
16 years 20 days ago
Fast and transparent recovery for continuous availability of cluster-based servers
Recently there has been renewed interest in building reliable servers that support continuous application operation. Besides maintaining system state consistent after a failure, o...
Rosalia Christodoulopoulou, Kaloian Manassiev, Ang...
GECCO
2008
Springer
182views Optimization» more  GECCO 2008»
15 years 7 months ago
Scaling ant colony optimization with hierarchical reinforcement learning partitioning
This paper merges hierarchical reinforcement learning (HRL) with ant colony optimization (ACO) to produce a HRL ACO algorithm capable of generating solutions for large domains. Th...
Erik J. Dries, Gilbert L. Peterson
BMCBI
2004
91views more  BMCBI 2004»
15 years 6 months ago
SIGI: score-based identification of genomic islands
Background: Genomic islands can be observed in many microbial genomes. These stretches of DNA have a conspicuous composition with regard to sequence or encoded functions. Genomic ...
Rainer Merkl
PKDD
2010
Springer
152views Data Mining» more  PKDD 2010»
15 years 5 months ago
CET: A Tool for Creative Exploration of Graphs
We present a tool for interactive exploration of graphs that integrates advanced graph mining methods in an interactive visualization framework. The tool enables efficient explorat...
Stefan Haun, Andreas Nürnberger, Tobias K&oum...