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» A Mechanization of Phylogenetic Trees
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BIBM
2008
IEEE
144views Bioinformatics» more  BIBM 2008»
16 years 17 days ago
PhyQL: A Web-Based Phylogenetic Visual Query Engine
Biologists are often interested to query published phylogenetic data for research purposes. PhyQL, a web-based visual phylogenetic query engine, can be quite useful on this regard...
Shahriyar Hossain, Munirul Islam, Jesmin, Hasan M....
ISMB
2001
15 years 7 months ago
Designing fast converging phylogenetic methods
Abstract: Absolute fast converging phylogenetic reconstruction methods are provably guaranteed to recover the true tree with high probability from sequences that grow only polynomi...
Luay Nakhleh, Usman Roshan, Katherine St. John, Je...
CORR
2004
Springer
119views Education» more  CORR 2004»
15 years 6 months ago
The Largest Compatible Subset Problem for Phylogenetic Data
Abstract. The phylogenetic tree construction is to infer the evolutionary relationship between species from the experimental data. However, the experimental data are often imperfec...
Andy Auyeung, Ajith Abraham
BMCBI
2006
137views more  BMCBI 2006»
15 years 6 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
JCB
2006
124views more  JCB 2006»
15 years 6 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...