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BIBM
2010
IEEE
156views Bioinformatics» more  BIBM 2010»
15 years 4 months ago
Truncation of protein sequences for fast profile alignment with application to subcellular localization
We have recently found that the computation time of homology-based subcellular localization can be substantially reduced by aligning profiles up to the cleavage site positions of s...
Man-Wai Mak, Wei Wang, Sun-Yuan Kung
VLSISP
2011
358views Database» more  VLSISP 2011»
15 years 1 months ago
Accelerating Machine-Learning Algorithms on FPGAs using Pattern-Based Decomposition
Machine-learning algorithms are employed in a wide variety of applications to extract useful information from data sets, and many are known to suffer from superlinear increases in ...
Karthik Nagarajan, Brian Holland, Alan D. George, ...
DAC
2003
ACM
16 years 7 months ago
Using estimates from behavioral synthesis tools in compiler-directed design space exploration
This paper considers the role of performance and area estimates from behavioral synthesis in design space exploration. We have developed a compilation system that automatically ma...
Byoungro So, Pedro C. Diniz, Mary W. Hall
WOSP
2010
ACM
16 years 1 months ago
Reducing performance non-determinism via cache-aware page allocation strategies
Performance non-determinism in computer systems complicates evaluation, use, and even development of these systems. In performance evaluation via benchmarking and simulation, nond...
Michal Hocko, Tomás Kalibera
CLUSTER
2007
IEEE
16 years 25 days ago
Balancing productivity and performance on the cell broadband engine
— The Cell Broadband Engine (BE) is a heterogeneous multicore processor, combining a general-purpose POWER architecture core with eight independent single-instructionmultiple-dat...
Sadaf R. Alam, Jeremy S. Meredith, Jeffrey S. Vett...