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KDD
2007
ACM
159views Data Mining» more  KDD 2007»
16 years 6 months ago
Constraint-driven clustering
Clustering methods can be either data-driven or need-driven. Data-driven methods intend to discover the true structure of the underlying data while need-driven methods aims at org...
Rong Ge, Martin Ester, Wen Jin, Ian Davidson
BMCBI
2007
156views more  BMCBI 2007»
15 years 6 months ago
Accuracy of structure-based sequence alignment of automatic methods
Background: Accurate sequence alignments are essential for homology searches and for building three-dimensional structural models of proteins. Since structure is better conserved ...
Changhoon Kim, Byungkook Lee
BMCBI
2005
89views more  BMCBI 2005»
15 years 6 months ago
An empirical analysis of training protocols for probabilistic gene finders
Background: Generalized hidden Markov models (GHMMs) appear to be approaching acceptance as a de facto standard for state-of-the-art ab initio gene finding, as evidenced by the re...
William H. Majoros, Steven Salzberg
SEMCO
2007
IEEE
16 years 16 days ago
Unrestricted Coreference: Identifying Entities and Events in OntoNotes
Most research in the field of anaphora or coreference detection has been limited to noun phrase coreference, usually on a restricted set of entities, such as ACE entities. In par...
Sameer S. Pradhan, Lance A. Ramshaw, Ralph M. Weis...
CP
2005
Springer
15 years 11 months ago
Applying Constraint Programming to Rigid Body Protein Docking
In this paper we show how Constraint Programming (CP) techniques can improve the efficiency and applicability of grid-based algorithms for optimising surface contact between comple...
Ludwig Krippahl, Pedro Barahona