Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
The quality of an information retrieval system heavily depends on its retrieval function, which returns a similarity measurement between the query and each document in the collect...
Background: Metabolic pathway is a highly regulated network consisting of many metabolic reactions involving substrates, enzymes, and products, where substrates can be transformed...
Lei Chen, Kai-Yan Feng, Yu-Dong Cai, Kuo-Chen Chou...
Background: The inference of a genetic network is a problem in which mutual interactions among genes are deduced using time-series of gene expression patterns. While a number of m...
This paper presents a semantic space profiler for parallel functional programs. Building on previous work in sequential profiling, our tools help programmers to relate runtime res...
Daniel Spoonhower, Guy E. Blelloch, Robert Harper,...