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» A Framework for Modeling DNA Based Molecular Systems
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BMCBI
2010
259views more  BMCBI 2010»
15 years 29 days ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
IJCAI
2007
15 years 7 months ago
A Framework for Decentralized Qualitative Model-Based Diagnosis
In this paper we propose a framework for decentralized model-based diagnosis of complex systems modeled with qualitative constraints and whose models are distributed among their s...
Luca Console, Claudia Picardi, Daniele Theseider D...
PDP
2007
IEEE
16 years 7 days ago
RealPeer--A Framework for Simulation-Based Development of Peer-to-Peer Systems
In the process of developing P2P systems simulation has proved to be an essential tool for the evaluation of existing and conceived P2P systems. So far, in practice there has been...
Dieter Hildebrandt, Ludger Bischofs, Wilhelm Hasse...
JCC
2002
74views more  JCC 2002»
15 years 5 months ago
Determination of the effective dielectric constant from the accurate solution of the Poisson equation
: Constant dielectric (CD) and distance-dependent dielectric (DDD) functions are the most popular and widespread in the Molecular Mechanics simulations of large molecular systems. ...
Vladislav Vasilyev
CONSTRAINTS
2008
95views more  CONSTRAINTS 2008»
15 years 6 months ago
Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination
Aligning DNA and protein sequences is a core technique in molecular biology. Often, it is desirable to include partial prior knowledge and conditions in an alignment. Going beyond...
Sebastian Will, Anke Busch, Rolf Backofen