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» A Family of Data-Parallel Derivations
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BMCBI
2010
189views more  BMCBI 2010»
15 years 6 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
BMCBI
2008
145views more  BMCBI 2008»
15 years 6 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
CORR
2010
Springer
93views Education» more  CORR 2010»
15 years 6 months ago
Rank Awareness in Joint Sparse Recovery
In this paper we revisit the sparse multiple measurement vector (MMV) problem, where the aim is to recover a set of jointly sparse multichannel vectors from incomplete measurement...
Mike E. Davies, Yonina C. Eldar
DAM
2007
107views more  DAM 2007»
15 years 6 months ago
Eliminating graphs by means of parallel knock-out schemes
In 1997 Lampert and Slater introduced parallel knock-out schemes, an iterative process on graphs that goes through several rounds. In each round of this process, every vertex elim...
Hajo Broersma, Fedor V. Fomin, Rastislav Kralovic,...
BMCBI
2004
128views more  BMCBI 2004»
15 years 5 months ago
cuticleDB: a relational database of Arthropod cuticular proteins
Background: The insect exoskeleton or cuticle is a bi-partite composite of proteins and chitin that provides protective, skeletal and structural functions. Little information is a...
Christiana K. Magkrioti, Ioannis C. Spyropoulos, V...