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» A Database Platform for Bioinformatics
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140
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CISIS
2010
IEEE
16 years 29 days ago
Scalability Analysis of Progressive Alignment on a Multicore
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...
Sebastian Isaza, Friman Sánchez, Georgi Gay...
182
Voted
ACML
2009
Springer
16 years 21 days ago
Automatic Choice of Control Measurements
Abstract. In experimental design, a standard approach for distinguishing experimentally induced effects from unwanted effects is to design control measurements that differ only ...
Gayle Leen, David R. Hardoon, Samuel Kaski
LION
2009
Springer
114views Optimization» more  LION 2009»
16 years 19 days ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
163
Voted
WABI
2007
Springer
109views Bioinformatics» more  WABI 2007»
16 years 5 days ago
Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies
Selecting an informative subset of SNPs, generally referred to as tag SNPs, to genotype and analyze is considered to be an essential step toward effective disease association studi...
Phil Hyoun Lee, Hagit Shatkay
168
Voted
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
16 years 4 days ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...