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» A Data Transformation System for Biological Data Sources
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IPPS
2003
IEEE
15 years 12 months ago
Parallel Detection of Regulatory Elements with gMP
The detection of regulatory elements from a large set of regulatory regions is a challenging problem in computational genomics. However, computational methods to extract this biol...
Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Sant...
GECCO
2003
Springer
103views Optimization» more  GECCO 2003»
15 years 12 months ago
MILA - Multilevel Immune Learning Algorithm
The biological immune system is an intricate network of specialized tissues, organs, cells, and chemical molecules. T-cell-dependent humoral immune response is one of the complex i...
Dipankar Dasgupta, Senhua Yu, Nivedita Sumi Majumd...
BIOWIRE
2007
Springer
15 years 10 months ago
An Artificial Chemistry for Networking
Chemical computing models have been proposed since the 1980ies for expressing concurrent computations in elegant ways for shared memory systems. In this paper we look at the distri...
Thomas Meyer, Lidia Yamamoto, Christian F. Tschudi...
GECCO
2006
Springer
171views Optimization» more  GECCO 2006»
15 years 10 months ago
A hybrid genetic search for multiple sequence alignment
This paper proposes a hybrid genetic algorithm for multiple sequence alignment. The algorithm evolves guide sequences and aligns input sequences based on the guide sequences. It a...
Seung-Hyun Moon, Sung-Soon Choi, Byung Ro Moon
EVOW
2008
Springer
15 years 8 months ago
Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps
A fundamental problem of modelling in Systems Biology is to precisely characterise quantitative parameters, which are hard to measure experimentally. For this reason, it is common ...
Hendrik Rohn, Bashar Ibrahim, Thorsten Lenser, Tho...