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» A Data Transformation System for Biological Data Sources
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WMPI
2004
ACM
15 years 11 months ago
The Opie compiler from row-major source to Morton-ordered matrices
The Opie Project aims to develop a compiler to transform C codes written for row-major matrix representation into equivalent codes for Morton-order matrix representation, and to a...
Steven T. Gabriel, David S. Wise
BMCBI
2006
151views more  BMCBI 2006»
15 years 6 months ago
Modeling Sage data with a truncated gamma-Poisson model
Background: Serial Analysis of Gene Expressions (SAGE) produces gene expression measurements on a discrete scale, due to the finite number of molecules in the sample. This means t...
Helene H. Thygesen, Aeilko H. Zwinderman
LCTRTS
2010
Springer
15 years 11 months ago
Cache vulnerability equations for protecting data in embedded processor caches from soft errors
Continuous technology scaling has brought us to a point, where transistors have become extremely susceptible to cosmic radiation strikes, or soft errors. Inside the processor, cac...
Aviral Shrivastava, Jongeun Lee, Reiley Jeyapaul
ICES
2003
Springer
103views Hardware» more  ICES 2003»
15 years 11 months ago
Fault Tolerance via Endocrinologic Based Communication for Multiprocessor Systems
The communication mechanism used by the biological cells of higher animals is an integral part of an organisms ability to tolerate cell deficiency or loss. The massive redundancy ...
Andrew J. Greensted, Andrew M. Tyrrell
BMCBI
2008
143views more  BMCBI 2008»
15 years 6 months ago
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Background: The identification and study of proteins from metagenomic datasets can shed light on the roles and interactions of the source organisms in their communities. However, ...
Shibu Yooseph, Weizhong Li, Granger G. Sutton