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» A Calculus for Data Mapping
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ISMB
2000
15 years 8 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
BMCBI
2010
109views more  BMCBI 2010»
15 years 7 months ago
Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression
Background: In the last decade, biochemical studies have revealed that epigenetic modifications including histone modifications, histone variants and DNA methylation form a comple...
Xiaojiang Xu, Stephen Hoang, Marty W. Mayo, Stefan...
BMCBI
2008
160views more  BMCBI 2008»
15 years 7 months ago
A comparison of four clustering methods for brain expression microarray data
Background: DNA microarrays, which determine the expression levels of tens of thousands of genes from a sample, are an important research tool. However, the volume of data they pr...
Alexander L. Richards, Peter Holmans, Michael C. O...
DATAMINE
2006
224views more  DATAMINE 2006»
15 years 7 months ago
Characteristic-Based Clustering for Time Series Data
With the growing importance of time series clustering research, particularly for similarity searches amongst long time series such as those arising in medicine or finance, it is cr...
Xiaozhe Wang, Kate A. Smith, Rob J. Hyndman
ENVSOFT
2007
94views more  ENVSOFT 2007»
15 years 6 months ago
Automated estimation and analyses of meteorological drought characteristics from monthly rainfall data
The paper describes a new software package for automated estimation, display and analyses of various drought indices – continuous functions of precipitation that allow quantitat...
V. U. Smakhtin, D. A. Hughes